KGBassembler (Brassicaceae genome assembler) is a C++ based tool for assembling contigs and/or scaffolds to full chromosomes based on the karyotype maps of Brassicaceae species and without the need of genetic and physical maps.
KGBassembler is featured with a graphical user interface (GUI) for users without the need of programming.
Easy to run
No installation is required to implement KGBassembler. Just download the implementation files from this website and use it directly.
Currently KGBassembler supports Linux and Winodws.
manual.pdf is provided here.
Chuang Ma, Hao Chen, Mingming Xin, Ruolin Yang and Xiangfeng Wang. KGBassembler: a karyotype-based genome assembler for Brassicaceae species. 2012, 28 (23):3141-3143. doi: 10.1093/bioinformatics/bts586.